Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015843475.1_cds_XP_016508753.1_21744
CDS Infomation

[gene=LOC107826305] [db_xref=GeneID:107826305] [protein=lysine-specific demethylase JMJ25-like] [protein_id=XP_016508753.1] [location=join(19158..19691,20028..20167,20242..20341,20452..20584,20676..20730,20833..21511,21703..22032,22463..22888,22989..23061,23476..23561,23804..23923,24003..24073,24480..24579)] [gbkey=CDS]
Sequence

ATGGATTATGCACGATCATCCTCTGGGCCTGGTGAAGATAACATTGGGATTCCTGATGAT
TTGCGGTGTAAGAGGTCCGATGGGAAACAATGGAGATGCACTGCAATGTCTATGCCTGAT
AAGACTGTGTGCGAAAAGCACTACATACAGGCTAAGAAGAGGGCTGCAAATTCTGCAATG
AGAGCCAACATGAAAAAAGGAAAGAGAAAATCATTGGATGAAAATGATATATATTCGGAG
AGTAAAAGTGATGATATGGATTTACCAGATGCGAACCAGAAAAATGAGGATTATTCTGGT
GCAGTCTGTGGGAAGAGGCATAAGGAAAAGGTGTCAAAGAATCGGATGAGTTATTTATCT
GAAACACCTCAAAGCAAGATGTTTTTAGTTCGTAGCATGAAGTCTGCTGATGATCTAGAC
ATGGAAGGTATGCAGTATGATGAAAGCCATAGAGGTTACAGGACGCCACCCCCTTCTGGT
ATGGAATCATCCAGAAGCAGATCGCAGAAGATGTTTGATTCAAGTCCTATGACGGGAACT
TCTGAAGCGAGCTCGGATTCTTCTGATAATACAGGGGGGCAGCGTTGTCACCAGTGTAGG
CGGAACAATCAACGAGTAACTTGGTGCCTTAGATGTGATAGAAGAGGATACTGTGAAAGC
TGCATCTCAACTTGGTACTCCGACATGCCAGTTGAAGAGATACAGAGGATTTGTCCTGCG
TGTCGTGGTAGTTGCAATTGTAAAGTGTGTTTGCGTGGAGGCAACTTGATAAAGGTTAGA
ATAAGGGAGATACCTGCACAAAACAAACTGCAGTTTCTCTATTCCCTTTTATCAGCAGTT
CTTCCAGTTGTTAAGCACATTCATAATCAGCAGTGCTTTGAGGTAGAGCTGGAAAAAAAA
CTTCGAGGAAATGGAATGGATCTCGGCCGGACTAAATTGAATGCAGATGAGCAAATGTGC
TGTAATTTCTGCAGGATACCAATTATTGATTACCATAGACACTGCCCAAATTGCTCATAT
GACCTCTGCCTCAGCTGCTGCAAAGATATCAGAGATGCAACCAAGGTTATTCAGGAAGAC
AGGGGTAAGCAGTTCCCAGGAAGAGTTGATGGCAGAAAAGCCACATCAAAGGAAGTGAAA
TTGTCAAACGTTCATCTAAATTTATTCACCAAGCTTTCTGATTGGAAAGCAGATAGTAAT
GGCTACATACCATGTCCCCCGAAGCAATATGGAGGCTGCAATTCCTCTGTCTTATCATTA
AAGCGAATCTTTAAGATGAATTGGGTGGCTAAACTGGTGAAAAATGTAGAAGAAATGGTT
AGTGGCTGTGAAGTATGTGATTCTGGTGATCTAGATAATACCTCTGAAGGGAAGTTGTTC
AAGGCTGCTCATAGAGAGAATGGTGATGATAACTTTTTGTACCATCCATCTTCTGAAGAT
ATTAGAAGTGAAGGGATTGAGAAATTCAGAAAGCAATGGAGCAGAGGTAAACCTGTTATC
ATCAAGGATGTTTATGATGTATCATCAATGTCAAACTGGGATCCAGTCGTAATATGGAGA
GGAGTAAGGGAGACAACCGAGGAGAAAACAAAAGATGATAACAGAACTGTGAAGGCCATT
GATTGCTTTGATTGGAGTGAGATTGATATTCAGCTTGGTCAGTTCATCAGAGGATACTCA
GAGGGAAGAATTCATGATAATGGTTGGCCAGAAATGCTCAAATTGAAAGACTGGCCTTCT
CCTAGTGCTTCAGAAGAGTTTTTATTATACCAGAGACCTGAGTTTATTAGTAAACTTCCT
TTACTTGAATTCATCCACTCCAAGTGGGGTCTTCTAAATGTAGCTGCAAAATTGCCTCAT
TATTCCCTGCAGAATGATGTTGGTCCTAAGATTTTTATTTCTTATGGGATGTATGAAGAA
CTTGGTAGAGGTGACTCAGTGAACAATCTGCACATCAGCATGCGTGACCTAGTATTCCTT
TTGGTCCATGTCAGTGAGGTCAAACTAAAAGGTTGGCAGAAGACAAAGATAGGAAAGATA
CAGAAAGCCTTTGCTGAATCTGATCACAGAGAATTTCCTGGTGCTGCACTAAATGTCTCA
AGGGAAGGAGATTTCTCCAAATTCTCACCTGGTGGAGATAAAGGGGATGATCATTATGCT
GATACAGATTCAAATGCCAATAAAATGTTGGTCGACCAAGAGAGCAGAGCTTCTCAGATT
GATGTAGATAACTTTAGTCATGAAGATCTGAATGGTTCCAATTTAAACGACTCGGAGACG
AGTCACTCTGGGGCTCTTTGGGATGTCTTCCGCAGGCAGGATGTGCCGATGCTGATCAAG
TATCTAAGATTTCATTGGAAGAAACATGGAGATTCAGACCGTGTAACAGATGATTCTGTG
CCCAGTCCTCTCCACGATGGAATAGTATATTTGAATGAGCATCATAAGAGAAAATTGAAA
GAGATATTTGGAATAGAGCCTTGGTCATTTGAACAGCAGTTAGGTGAAGCAATTTTCATT
CCTGCTGGATGTCCTTTCCAAGTGAGGAATCTTCAGTCCACTGTTCAATTGGGCCTTGAT
TTTCTTTCTCCAGAAAGTTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTT
CCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTGGGGAAGATATCGCTCTATGCA
GCAAGCTCGGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAAGTTGGTCCTGAG
CTTGGATTTGAGGATCCCAATTTGACTGCATTGGTGTCAGAGAACCTGGAAAAGATGATT
AAGAGACGTCAGGTAGCTTGTGTTTAA

Peptide Sequence

PEP ID

XP_016508753.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ25-like [Nicotiana tabacum]
Sequence

MDYARSSSGPGEDNIGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAM
RANMKKGKRKSLDENDIYSESKSDDMDLPDANQKNEDYSGAVCGKRHKEKVSKNRMSYLS
ETPQSKMFLVRSMKSADDLDMEGMQYDESHRGYRTPPPSGMESSRSRSQKMFDSSPMTGT
SEASSDSSDNTGGQRCHQCRRNNQRVTWCLRCDRRGYCESCISTWYSDMPVEEIQRICPA
CRGSCNCKVCLRGGNLIKVRIREIPAQNKLQFLYSLLSAVLPVVKHIHNQQCFEVELEKK
LRGNGMDLGRTKLNADEQMCCNFCRIPIIDYHRHCPNCSYDLCLSCCKDIRDATKVIQED
RGKQFPGRVDGRKATSKEVKLSNVHLNLFTKLSDWKADSNGYIPCPPKQYGGCNSSVLSL
KRIFKMNWVAKLVKNVEEMVSGCEVCDSGDLDNTSEGKLFKAAHRENGDDNFLYHPSSED
IRSEGIEKFRKQWSRGKPVIIKDVYDVSSMSNWDPVVIWRGVRETTEEKTKDDNRTVKAI
DCFDWSEIDIQLGQFIRGYSEGRIHDNGWPEMLKLKDWPSPSASEEFLLYQRPEFISKLP
LLEFIHSKWGLLNVAAKLPHYSLQNDVGPKIFISYGMYEELGRGDSVNNLHISMRDLVFL
LVHVSEVKLKGWQKTKIGKIQKAFAESDHREFPGAALNVSREGDFSKFSPGGDKGDDHYA
DTDSNANKMLVDQESRASQIDVDNFSHEDLNGSNLNDSETSHSGALWDVFRRQDVPMLIK
YLRFHWKKHGDSDRVTDDSVPSPLHDGIVYLNEHHKRKLKEIFGIEPWSFEQQLGEAIFI
PAGCPFQVRNLQSTVQLGLDFLSPESLGEAVRMAEEIRGLPNTHDAKLQMLEVGKISLYA
ASSAIKEVQKLVLDPKVGPELGFEDPNLTALVSENLEKMIKRRQVACV

Transcript Sequence

Gene sequence data has not been registered.